Publications

This page shows a list of publications that use SciServer. Technical Publications give information about the SciServer system. Scientific Publications use the system to answer questions from one or more of SciServer’s Science Collaborations.

Technical Publications

Taghizadeh-Popp, M., Kim, J. W., Lemson, G., Medvedev, D., Raddick, M. J., Szalay, A. S., Thakar, A. R., Booker, J., Chhetri, C., Dobos, L., & Rippin, M. 2020. SciServer: a Science Platform for Astronomy and Beyond (offsite link). Astronomy and Computing, 33(100412), 1-15. doi:10.1016/j.ascom.2020.100412.

Medvedev, D., Lemson, G., & Rippin, M. 2016. SciServer Compute: Bringing analysis close to the data (offsite link). In Proceedings of the 28th International Conference on Scientific and Statistical Database Management, eds. P. Baumann, I. Manolescu-Goujot, L. Trani, G. G. Barnafoldi, L. Dobos, & E. Banyai. New York:ACM. 27.

Raddick, M. J., Kim, J. W., Lemson, G., Medvedev, D., & Taghizadeh-Popp, M. in press. SciServer Compute: Bring analysis close to the data. To appear in Proceedings of ADASS XXVI. San Francisco, CA:Astronomical Society of the Pacific.

Scientific Publications

Turbulence

Danish, M. & Meneveau, C. 2017. Multi-scale analysis of the invariants of velocity gradient tensor in isotropic turbulence (offsite link). Physical Review Fluids, 3, 044604. doi:10.1103/PhysRevFluids.3.044604

Elsas, J. H., Szalay, A. S., & Meneveau, C. 2018. Geometry and scaling laws of excursion and iso-sets of enstrophy and dissipation in isotropic turbulence (offsite link). Journal of Turbulence, doi:10.1080/14685248.2018.1424995. arXiv:1708.05409 (offsite link).

Johnson, P. L., Hamilton, S. S., Burns, R., & Meneveau, C. 2017. Analysis of geometrical and statistical features of Lagrangian stretching in turbulent channel flow using a database task-parallel particle tracking algorithm. Physical Review Fluids, 2(1), 014605-1-20, doi:10.1103/PhysRevFluids.2.014605.

Johnson, P. L. & Meneveau, C. 2016. Large-deviation statistics of vorticity stretching in isotropic turbulence (offsite link). Physical Review E, 93, 033118.

S. Scarsoglio, G. Iacobello, and L. Ridolfi. 2016. Complex networks unveiling spatial patterns in turbulence (offsite link). International Journal of Bifurcation and Chaos, 26, 13, 1650223.

Graham, J., Kanov, K., Yang, X. I. A., Lee, M., Malaya, N., Lalescu, C. C., Burns, R., Eyink, G., Szalay, A., Moser, R. D., & Meneveau, C. 2015. A web services accessible database of turbulent channel flow and its use for testing a new integral wall model for LES (offsite link). Journal of Turbulence, 17(2), 181-215.

Johnson, P. L. & Meneveau, C. 2015. Large-deviation joint statistics of the finite-time Lyapunov spectrum in isotropic turbulence (offsite link). Physics of Fluids, 085110.

Materials Science

Carey, N. S., Budavari, T., Daphalapurkar, N., & Ramesh, K. T. 2016. Data integration for materials research (offsite link). Integrating Materials and Manufacturing Innovation, 5, 7.

Levine, L., Lane, B.,  Becker, C. , Belak, J., Carson, R., Deisenroth, D., Glaessgen, E., Gnaupel‑Herold, T., Gorelik, M, Greene, G, Habib, S., Higgins, C., Hill, M.,  Hrabe, N., Killgore, J., Kim, J., Lemson, G., et al. 2024. Outcomes and Conclusions from the 2022 AM Bench Measurements, Challenge Problems, Modeling Submissions, and Conference. Integrating Materials and Manufacturing Innovation, doi:10.1007/s40192-024-00372-4

Genomics

Collado-Torres, L., Nellore, A., Kramers, K., Ellis, S. E., Taub, M. A., Hansen, K. D., Jaffe, A. E., Langmead, B., & Leek, J. T. 2017. Reproducible RNA-seq analysis using recount2. Nature Biotechnology, 35, 319-321, doi:10.1038/nbt.3838.

Oceanography

Almansi, M., Haine, T. W. N., Pickart, R. S., Magaldi, M. G., Gelderloos, R., & Mastropole, D. 2017. High-Frequency Variability in the Circulation and Hydrography of the Denmark Strait Overflow from a High-Resolution Numerical Model (offsite link). Journal of Physical Oceanography 47(12), 2999–3013. doi10.1175/JPO-D-17-0129.1.

Gelderloos, R., Szalay, A. S., Haine, T. W. N., & Lemson, G. 2016. A fast algorithm for neutrally-buoyant particles in numerical ocean modeling. In Proceedings of the IEEE 12th International Conference on eScience, 381-388, doi:10.1109/eScience.2016.7870923.

Cosmological Physics

Liu, Z., Ivkin, N., Yang, L., Neyrinck, M., Lemson, G., Szalay, A., Braverman, V., Budavari, T., Burns, R., & Wang, X. 2015. Streaming algorithms for halo finders (offsite link). In Proceedings of the 2015 11th International Conference on e-Science. Los Alamitos, CA:IEEE Computer Society.